Ah yes. Stainless screws are fine. Drill pilot holes, use flush heads, and a counter sinker to set them flush. Fuller makes a nice assortment kit of one-step tapered pilot and counter bore bits, about $50. I just had to replace my No. 6 from using it with durock for marble and tile counter tops at the house.
Fir panel standard marine grade ply is fine for that. I really don't like to see screws into end-grain, so 3/4" oak or fir is recommended for framing where required.
I also suggest coating everything with epoxy so you never have to worry about them deteriorating. Get a quart of WestSystem and paint them once everything is built up. For hidden surfaces, pre-coat.
BTW, epoxy is the only thing that will stick to cured fiberglass. A lot of buys make the mistake of trying to recoat with polyester resin, but it will peel off readily. Ply to 'glass joints can be done with glass mat and epoxy.
Seems to me Grady uses some kind of 'green' treated marine ply, but then they don't encapsulate everything under-deck. We all now realize it doesn't last forever. A proper repair will.