The OP didn't state how long the boat site in between uses but my experience is that in general, the batteries on that model boat will maintain a decent charge for weeks if not months. Of course that depends on whether there is and current draw for directly connected loads like electronic bilge pumps, stereo memory feeds etc. In addition it the bilge gets water from whatever, eventually the battery will run down. If the bilge pump does cycle, the solar maintainer won't make much difference.
Make sure that directly connected loads are connected to only one battery and that the battery switch is set to off when moored. Should the direct connected battery run down, the second batter when selected will be able to start the motor. If really paranoid, carrying a boost charge pack can help start the motor if needed.