You have two choices. Either go to the dealer and let them sort it out, or start learning about your boat. A harsh truth, but a novel could be written from what is left out of your original post.
Get the manual for your boat and find the DC diagram pages. If you don't have one, download from the Grady White site. Start comparing it to what you see in the battery compartment. It may or may not align, depending on what previous owners and dealers did.
Make a diagram that shows all the connections between batteries and the additional wires. Figure out where they go.
Determine if you have a shore charger or not. If you do, find the manual. Look at the lights displayed on the unit, and compare to the manual.
There are a couple of great books about DC wiring for boats, one is something like the Boat Owners DC wiring bible.
Buy and learn how to use a multi-meter. Start at the batteries. f batteries are good, work downstream from there. Go to an accessory which is not working and check the power at that switch and so on.