Depending on sea chect design's and location they can add disturbance to propeller's. We have stopped using them and now have cntralized sea water system's where I work, they are expensive and require more components so they are better suited for large boats.
The biggest issue with sea chests are if they are ever clogged nothing works, if you have various pick up's, you might lose one system, but rarely all of them. Also on smaller boat's, keeping runs shorter tends to lead to less problems. I do agree 100% that if it was below or near a living space the pump should have been boxed in or the bulkhead or floor that butts to the pump should contain some sound insulation to atleast dampen the sound. Since no Grady model's are huge boat's and moving the pump from the aft cabin to the cockpit near the transom is not a very far run, surprised they did not put it there since on many other models they are. Not sure if space or access was an issue and one spot was better then another. Also, maybe that model had issues with pick up strainers and thru hulls near one another causing a disturbance. There could be a few factor's, but I agree 100% something better should have been done to accomodate the noise.